Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs73029076 chr19:29292032 G/T 6.64E-6 115 48 33.67 22.9 KM Plot
THYM rs73029079 chr19:29294903 A/G 7.98E-6 115 46.6 35 22.9 KM Plot
THYM rs73029081 chr19:29295583 C/G 6.64E-6 115 48 33.67 22.9 KM Plot
THYM rs73030738 chr19:29312328 G/A 5.18E-6 119 49.4 38.33 22.9 KM Plot
THYM rs7303136 chr12:58341138 T/C 7.46E-13 118 42.25 27.3 6 KM Plot
THYM rs73038177 chr7:842103 G/T 0.000116 114 46.6 22.5 25.47 KM Plot
THYM rs73038185 chr7:845206 A/G 0.000116 114 46.6 22.5 25.47 KM Plot
THYM rs7307628 chr12:58342285 T/C 7.46E-13 118 42.25 27.3 6 KM Plot
THYM rs73080312 chr3:48737847 C/T 1.51E-8 118 42.25 35 12.63 KM Plot
THYM rs73088374 chr7:29654819 C/A 6.97E-13 117 38.33 46.27 6 KM Plot
THYM rs73090342 chr7:29687540 T/C 4.22E-13 119 38.23 46.07 6 KM Plot
THYM rs73090343 chr7:29688768 T/C 4.13E-13 119 38.13 46.27 6 KM Plot
THYM rs73092542 chr3:71817570 T/C 0.00026 114 49.4 40.3 27.83 KM Plot
THYM rs73096545 chr4:12541645 A/G 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs73110943 chr5:67015614 C/A 4.37E-8 118 44.38 39.45 12.93 KM Plot